| id | 769 |
|---|---|
| protein family | SELENOO |
| protein name | Th.ps-SELENOO-1-U |
| species name | Thalassiosira pseudonana |
| seq length | 683 |
| cds location | 456084..454834,454728..453931 |
| secis location | 447625..447528 |
| dna sequence | CGCAAATCATTCAACCACTCATGGATCAACAACCTCTCTCCCGAAGACCCACTCAACTACGAACGATCCACTTCCAAATACTCTGGCGGTTCTCATCCAGGAAGGCCGGTCTACAATGGACACTTTGTGCGTGTGAGACCTACGCCGTTGATGAATCCAAAGTTGGTGATTTACAGTGAGGAAATGTGTAAGGAGTTGGGGATTGGGGTGGGGGAGGTGGAGAGTGAGAGTTTTTTGAGGTATTTTAGTGGAGACGTGGATGGAGCTTTTCAGTATTCAATGGGTGGTAGTGGTGAGGAGGGGGGAATGGAGGAGACACCGATTGAAACGTGGGCTACTCCCTATGCTTTGAGCATTATGGGGAGGAGGTACACCAACAATTGTCCCTTTGGAACAGGTGATGGATACGGTGATGGACGTGCCATTAGTGTTGGAGAAGTTGTAGTTCCCTTTGATACCACCTCGGACCCTGGTCCGGCTTACCCTCATCACGCCAAACGATATGAGCTTCAACTCAAGGGGGCAGGTCAGACTCCCTTCTGCCGCGGAGCCGACGGACGAGCTGTACTCCGTTCCTCCATTCGTGAATTCCTCGCGAGTGAGGCAATGCACCATCTTGGAGTGTGTACCACTCGTGCCCTATCGTTGGTGGTGAGCGATGGTGCCAACGGGGACACGTCCAATCGTCCTTGGTATAGCGATAATGCCAAGAATCGCACTCCGAACTTGCCTCGTATGGACGACCCTCGATTGGCTCAATACAGCGACGCGGAGAAGAAGGAGATCATCTCTCAATTGGCTGCTCAGGCAAAGGCTGATCCGGATACATTGGTGGAAGAACGTTGCGCCATCACAACACGTGTTGCCAGCAGCTTTGTGAGGATTGGTCATTTAGATCTCTTTGCACGTCGTGTGGAAATGATTGCAATGAAGAATGCCAAGGCGAAGAATGATAGTATGGAGGTAGAGGAGGTGCCTGTTAAGGAAACACCGCAGTATCAAGAGTTGGAGGACATGATGTGGCATGCTTGTTATAGGGAGTATTACAATGATGCGTATGAGCCGTATTGGGAAAGTAAGGATGCCAAGAGTGCTGCAATGGCTTTGATGAATGGGACGATGAACACTCTGTCTCGTATGGTAGCCAATTGGGTCCGGGTGGGCTTCGTACAGGGAAATTTCAACGCGGATAATTGTTTGGTGGGTGGGAGGACAATGGACTACGGACCGTTTGGATTCCTGGACGTTTATCATCCACTCTCTGCGAAGTGGACTGGAAGTGGAGAGCACTTTGGCTTCATGAACCAACCAAAGGCTGGCTATGCCAACTTCGCAGTACTTGTAGAGAGTCTTCTCCCAATTATTGAGGCCAATGGAGGCGATGCTGACAAAGTGCGTGACGAAATGCTCAAAAAGGCTCAGACGGTCTTCTCCGAAGCTGTTGACAATGCCATGAGCTCAAAGATGGGTATTCAAGTTGGTCCTCCGGAGATGGCAAAGGAAGCTGATGAGTTGTGGGAAGAGATTGAGCCGTTGCTGAGAGGAGGGCGTGCGGATTGGACACTATTTTGGAGGCAGCTCACTTACGTTGCGGCGAAATACTCTCCTGCCAATGAACCTTCCACTGATTACGATGGCATGGTTACGACTTTGCTGGGTGAAAAGAACACTAATCCATTCTATGATGCATTAACGGATGAAAACAAAGAGACTCTGCGAGGTTGGATTGAAAGATGGTACAAGGCACTCGCATCTAGCCATACGTTTGCTTCCAGCCAATCAACCGACACATCATTGGCTCCTCCCGAAGAGAGGATGCGACTTGCCAATCCAAAGTATACTCTGAGAGAATGGATGCTCGTGGAAGCGTATTCAAAGGCAGATGCAGGTAAATTCATGCCTGGCGACTACTCTGGAGTACATGAGCTTTACAACTTGACAATGGATCCTTATGGTGAGGGCTCACCAGAAGCTCATAAGAAGTACTACCGTCGTGCACCTGACGAATCGCTTAGTGCAGGTGGAACGGCCTTCGTGTCCTGATCCTCG |
| amino acid sequence | RKSFNHSWINNLSPEDPLNYERSTSKYSGGSHPGRPVYNGHFVRVRPTPLMNPKLVIYSEEMCKELGIGVGEVESESFLRYFSGDVDGAFQYSMGGSGEEGGMEETPIETWATPYALSIMGRRYTNNCPFGTGDGYGDGRAISVGEVVVPFDTTSDPGPAYPHHAKRYELQLKGAGQTPFCRGADGRAVLRSSIREFLASEAMHHLGVCTTRALSLVVSDGANGDTSNRPWYSDNAKNRTPNLPRMDDPRLAQYSDAEKKEIISQLAAQAKADPDTLVEERCAITTRVASSFVRIGHLDLFARRVEMIAMKNAKAKNDSMEVEEVPVKETPQYQELEDMMWHACYREYYNDAYEPYWESKDAKSAAMALMNGTMNTLSRMVANWVRVGFVQGNFNADNCLVGGRTMDYGPFGFLDVYHPLSAKWTGSGEHFGFMNQPKAGYANFAVLVESLLPIIEANGGDADKVRDEMLKKAQTVFSEAVDNAMSSKMGIQVGPPEMAKEADELWEEIEPLLRGGRADWTLFWRQLTYVAAKYSPANEPSTDYDGMVTTLLGEKNTNPFYDALTDENKETLRGWIERWYKALASSHTFASSQSTDTSLAPPEERMRLANPKYTLREWMLVEAYSKADAGKFMPGDYSGVHELYNLTMDPYGEGSPEAHKKYYRRAPDESLSAGGTAFVSUSS |
| secis free energy | -10.36 |
| secis sequence | AUGGAAUCCA UGUAUAU GUCACUCUCUUUG UUGAG ACUGUCCAUC AA CGUUUACACCAACAAUG GAGACGGGGU UGAG GCAC AUUUGG UCUCUGUGGU |
| est id | gi|162355301|gb|FC496498.1|FC496498,gi|162371617|gb|FC513428.1|FC513428 |
| est cds location | 1..716 |
| est secis location | |
| est dna sequence | CAGTACTTGTAGAGAGTCTTCTCCCAATTATTGAGGCCAATGGAGGCGATGCTGACAAAGTGCGTGACGAAATGCTCAAAAAGGCTCAGACGGTCTTCTCCGAAGCTGTTGACAATGCCATGAGCTCAAAGATGGGTATTCAAGTTGGTCCTCCGGAGATGGCAAAGGAAGCTGATGAGTTGTGGGAAGAGATTGAGCCGTTGCTGAGAGGAGGGCGTGCGGATTGGACACTATTTTGGAGGCAGCTCACTTACGTTGCGGCGAAATACTCTCCTGCCAATGAACCTTCCACTGATTACGATGGCATGGTTACGACTTTGCTGGGTGAAAAGAACACTAATCCATTCTATGATGCATTAACGGATGAAAACAAAGAGACTCTGCGAGGTTGGATTGAAAGATGGTACAAGGCACTCGCATCTAGCCATACGTTTGCTTCCAGCCAATCAACCGACACATCATTGGCTCCTCCCGAAGAGAGGATGCGACTTGCCAATCCAAAGTATACTCTGAGAGAATGGATGCTCGTGGAAGCGTATTCAAAGGCAGATGCAGGTAAATTCATGCCTGGCGACTACTCTGGAGTACATGAGCTTTACAACTTGACAATGGATCCTTATGGTGAGGGCTCACCAGAAGCTCATAAGAAGTACTACCGTCGTGCACCTGACGAATCGCTTAGTGCAGGTGGAACGGCCTTCGTGTCCTGATCCTCG TAA |
| est amino acid sequence | VLVESLLPIIEANGGDADKVRDEMLKKAQTVFSEAVDNAMSSKMGIQVGPPEMAKEADELWEEIEPLLRGGRADWTLFWRQLTYVAAKYSPANEPSTDYDGMVTTLLGEKNTNPFYDALTDENKETLRGWIERWYKALASSHTFASSQSTDTSLAPPEERMRLANPKYTLREWMLVEAYSKADAGKFMPGDYSGVHELYNLTMDPYGEGSPEAHKKYYRRAPDESLSAGGTAFVSUSS * |
| est secis free energy | 0 |
| est secis sequence |